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My NASs are purely NAS, I prefer a Debian server for... Pretty much everything. But my storage only does storage, I keep those separate (even for an old PC acting as a NAS).
No matter what goes down, I can bring it back up, even with a hardware failure.
I used to do that. I had a QNAP NAS and a small Intel NUC running Arch that would host all my services. I would just mount the NAS folders via Samba into the NUC. Problem is that services can't watch the filesystem for changes. If I add a video to my Jellyfin directory, Jellyfin won't automatically initiate a scan.
Nowadays, I just combine them into one. Just seems simpler that way.
I just have my downloader trigger a scan at completion.
I have a few proxmox clusters going, combining it all wouldn't be practical. This way my servers (tiny/mini/micros I've repurposed) stay small with decent sized ssd's, big storage in 2 NAS's, and a third for backups.
That sounds like a config issue. I use NFS shares in a similar way, and Plex/*arr/etc has zero issues watching for changes.
I think it's a samba limitation. Maybe NFS works well for that case.